PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G064700.3
Common NameB456_011G064700, LOC105777231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 418aa    MW: 45433.9 Da    PI: 9.3165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G064700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Gorai.011G064700.3  6 FVCEICNKGFQRDQNLQLHRRGH 28
                        89*******************88 PP

2zf-C2H213.10.000382104123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Gorai.011G064700.3  82 WKCDKCSKRYAVQSDWKAHSKTC 104
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PfamPF121716.4E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355894777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.8E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKKVYVCP EVSCVHHDPS  60
RALGDLTGIK KHFYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR CDCGTLFSRR  120
DSFITHRAFC DALAEESSRA AIMGANTFQP GSSHTNLQVP QFNPHDIQAF SLKQEQHQRF  180
TPLKPDIPPW LATQPMLGAG AGLSSSSSSI FSPSLTLHEN PTPIPTLDPT LPPYHPTTVL  240
SPHMSATALL QKAAQMGATL SNKPGSSSAP ATSTAMRPHQ QTHVSADFVG STNNNSTTAG  300
FGLNLSSREE VSMGSGFIHG STHHASESSG APPPPSLFLQ GMMNSLSSPI GFDSTSFDDI  360
AFSGILNAKK KSGTLINESF SKTTAEPENG TGNNNDHESR AGGSTQGEAL RRDFLAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244KLKQRTSKEVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455825.10.0PREDICTED: protein indeterminate-domain 7-like isoform X1
SwissprotQ9SCQ61e-102IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0D2T3E80.0A0A0D2T3E8_G
STRINGVIT_09s0002g02300.t011e-147(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-97indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]